Biochemical applications of mass spectrometry – LSMBO

The BioOrganic Mass Spectrometry laboratory (LSMBO) belongs to the Institut Plurisciplinaire Hubert Curien (IPHC : of the University of Strasbourg. The LSMBO is hosting an IBiSA-certified proteomic platform (Strasbourg Grand Est Proteomic Platform) and is the Strasbourg node of the French Proteomic Infrastructure (ProFI). The LSMBO is a 30 year-experienced team in the structural study of peptides and proteins by mass spectrometry. The laboratory is renowned for developing new methods in proteomic analysis, bioinformatics and structural mass spectrometry for the analysis of protein/protein interactions in large complexes. Besides that, long term collaborations with several pharmaceutical companies cover topics such as full characterization of natural and/or recombinant proteins used in human therapy, toxicoproteomics, protein/drug interaction.
The LSMBO team develops innovative methodologies in chromatography, mass spectrometry (MS) and bioinformatics for :

  • Functional proteomic analysis for the identification and quantification of thousands of proteins in complex biological matrices (sample preparation, targeted (PRM) and global (DIA) quantitative LC-MS/MS analysis, statistical analysis and integration of multi-omics data).
  • Structural proteomic analysis for the characterization of either proteins alone or in complexes. The combination of native MS, mass photometry, ion mobility, H/D exchange and chemical cross-linking approaches followed by MS is applied to integrative structural biology projects.
  • Characterization of therapeutic proteins (monoclonal antibodies).
  • Interpretation of functional (Proline) and structural proteomic data.

The LSMBO hosts the Strasbourg Grand Est proteomics platform (PSGE) and is the Strasbourg node of the national Proteomics Infrastructure ProFI. The LSMBO is a partner of two TIT programs of the University of Strasbourg, IMS and TransplantexNG.

Scientifique coordinator: Sarah CIANFERANI

LSMBO Team members

Corentin BEAUMAL

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Charlotte BRUN

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Alexandre BUREL

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Christine CARAPITO

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Stéphane ERB

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Martine RIVET

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Jean Marc STRUB

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Bertile, F.; Plumel, M.; Maes, P.; Hirschler, A.; Challet, E.
Daytime Restricted Feeding Affects Day-Night Variations in Mouse Cerebellar Proteome
Frontiers in Molecular Neuroscience, 2021, 14, 613161. (10.3389/fnmol.2021.613161).

Bertile, Fabrice; Habold, Caroline; Le Maho, Yvon; Giroud, Sylvain
Body protein sparing in hibernators: a source for biomedical innovation
Frontiers in Physiology, 2021, 12, 634953. (10.3389/fphys.2021.634953).

Desligniere, E.; Ley, M.; Bourguet, M.; Ehkirch, A.; Botzanowski, T.; Erb, S.; Hernandez-Alba, O.; Cianferani, S.
Pushing the limits of native MS: Online SEC-native MS for structural biology applications
International Journal of Mass Spectrometry, 2021, 461, 116502. (10.1016/j.ijms.2020.116502).

Desligniere, E.;Botzanowski, T.;Diemer, H.;Cooper-Shepherd, D. A.;Wagner-Rousset, E.;Colas, O.;Bechade, G.;Giles, K.;Hernandez-Alba, O.;Beck, A.;Cianferani, S.
High-Resolution IMS-MS to Assign Additional Disulfide Bridge Pairing in Complementarity-Determining Regions of an IgG4 Monoclonal Antibody
Journal of the American Society for Mass Spectrometry, 2021, 32(10), 2505-2512. (10.1021/jasms.1c00151).

Erb, S.;Cianferani, S.;Marcoux, J.
Hands on Native Mass Spectrometry Analysis of Multi-protein Complexes
Methods Mol Biol, 2021, 2247, 173-191. (10.1007/978-1-0716-1126-5_10).

Bragantini, B.; Charron, C.; Bourguet, M.; Paul, A.; Tiotiu, D.; Rothe, B.; Marty, H.; Terral, G.; Hessmann, S.; Decourty, L.; Chagot, M. E.; Strub, J. M.; Massenet, S.; Bertrand, E.; Quinternet, M.; Saveanu, C.; Cianferani, S.; Labialle, S.; Manival, X.; Charpentier, B.
The box C/D snoRNP assembly factor Bcd1 interacts with the histone chaperone Rtt106 and controls its transcription dependent activity
Nature Communications, 2021, 12(1), 1859. (10.1038/s41467-021-22077-4).

Desligniere, E.; Ehkirch, A.; Duivelshof, B. L.; Toftevall, H.; Sjogren, J.; Guillarme, D.; D’Atri, V.; Beck, A.; Hernandez-Alba, O.; Cianferani, S.
State-of-the-Art Native Mass Spectrometry and Ion Mobility Methods to Monitor Homogeneous Site-Specific Antibody-Drug Conjugates Synthesis
Pharmaceuticals, 2021, 14(6), 498. (10.3390/ph14060498).

Bons, J.; Husson, G.; Chion, M.; Bonnet, M.; Maumy-Bertrand, M.; Delalande, F.; Cianferani, S.; Bertrand, F.; Picard, B.; Carapito, C.
Combining label-free and label-based accurate quantifications with SWATH-MS: Comparison with SRM and PRM for the evaluation of bovine muscle type effects
Proteomics, 2021, 21(10), e2000214. (10.1002/pmic.202000214).

Launay, K.; Amalian, J. A.; Laurent, E.; Oswald, L.; Al Ouahabi, A.; Burel, A.; Dufour, F.; Carapito, C.; Clement, J. L.; Lutz, J. F.; Charles, L.; Gigmes, D.
Precise Alkoxyamine Design to Enable Automated Tandem Mass Spectrometry Sequencing of Digital Poly(phosphodiester)s
Angewandte Chemie-International Edition, 2021, 60(2), 917-926. (10.1002/anie.202010171).

Baixe, Sebastien; Ball, Vincent; Jierry, Loic; Cianferani, Sarah; Strub, Jean-Marc; Haikel, Youssef; Metz-Boutigue, Marie-Helene; Etienne, Olivier
Strongly Adhesive and Antimicrobial Peptide-Loaded, Alginate-Catechol-Based Gels for Application against Periimplantitis
Appl Sci, 2021, 11(21), 10050. (10.3390/app112110050).

Cussonneau, Laura; Boyer, Christian; Brun, Charlotte; Deval, Christiane; Loizon, Emmanuelle; Meugnier, Emmanuelle; Gueret, Elise; Dubois, Emeric; Taillandier, Daniel; Polge, Cécile; Béchet, Daniel; Gauquelin-Koch, Guillemette; Evans, Alina L.; Arnemo, Jon M.; Swenson, Jon E.; Blanc, Stéphane; Simon, Chantal; Lefai, Etienne; Bertile, Fabrice; Combaret, Lydie
Concurrent BMP Signaling Maintenance and TGF-_ Signaling Inhibition Is a Hallmark of Natural Resistance to Muscle Atrophy in the Hibernating Bear
Cells, 2021, 10(8), 1873. (10.3390/cells10081873).

Inverso, D.;Shi, J.;Lee, K. H.;Jakab, M.;Ben-Moshe, S.;Kulkarni, S. R.;Schneider, M.;Wang, G.;Komeili, M.;Velez, P. A.;Riedel, M.;Spegg, C.;Ruppert, T.;Schaeffer-Reiss, C.;Helm, D.;Singh, I.;Boutros, M.;Chintharlapalli, S.;Heikenwalder, M.;Itzkovitz, S.;Augustin, H. G.
A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie-Wnt signaling axis in the liver
Developmental Cell, 2021, 56, 1677-1693 e1610. (10.1016/j.devcel.2021.05.001).

Ghoroghi, S.; Mary, B.; Larnicol, A.; Asokan, N.; Klein, A.; Osmani, N.; Busnelli, I.; Delalande, F.; Paul, N.; Halary, S.; Gros, F.; FOllen, L.; Haeberle, A. M.; Royer, C.; Spiegelhalter, C.; Andre-Gregoire, G.; Mittelheisser, V.; Detappe, A.; Murphy, K.; Timpson, P.; Carapito, R.; Blot-Chabaud, M.; Gavard, J.; Carapito, C.; Vitale, N.; Lefebvre, O.; Goetz, J. G.; Hyenne, V.
Ral GTPases promote breast cancer metastasis by controlling biogenesis and organ targeting of exosomes
Elife, 2021, 10, e61539. (10.7554/eLife.61539).

Givre, Lucas; Crola Da Silva, Claire; Swenson, Jon, E; Arnemo, Jon, M; Gauquelin-Koch, Guillemette; Bertile, Fabrice; Lefai, Etienne; Gomez, Ludovic
Cardiomyocyte Protection by Hibernating Brown Bear Serum: Toward the Identification of New Protective Molecules Against Myocardial Infarction
Frontiers in Cardiovascular Medicine, 2021, 8, 687501. (10.3389/fcvm.2021.687501).

Perton, Francis; Cotin, Geoffrey; Kiefer, Céline; Strub, Jean-Marc; Cianferani, Sarah; Greneche, Jean-Marc; Parizel, Nathalie; Heinrich, Benoît; Pichon, Benoit; Mertz, Damien; Begin-Colin, Sylvie
Iron Stearate Structures: An Original Tool for Nanoparticles Design
Inorganic Chemistry, 2021, 60(16), 12445-12456. (10.1021/acs.inorgchem.1c01689).

KOjzer, Joop J. P.; Lattwein, Kirby R.; Beekers, Inés; Langeveld, Simone A. G.; Leon-Grooters, Mariël; Strub, Jean-Marc; Oliva, Estefania; Mislin, Gaëtan L. A.; de Jong, Nico; van der Steen, Antonius F. W.; Klibanov, Alexander L.; van Wamel, Willem J. B.; Kooiman, Klazina
Vancomycin-decorated microbubbles as a theranostic agent for Staphylococcus aureus biofilms
International Journal of Pharmaceutics, 2021, , 121154. (10.1016/j.ijpharm.2021.121154).

Cichocki, Bogdan Adam; Khobragade, Vrushali; Donzel, Maxime; Cotos, Leandro; Blandin, Stéphanie; Schaeffer-Reiss, C.; Cianferani, S.; Strub, Jean Marc; Elhabiri, M.; Davioud-Charvet, Elisabeth
A class of valuable (pro-)activity-based protein profiling probes: application to the redox-active antiplasmodial agent, plasmodione
JACS Au, 2021, 1(5), 669-689. (10.1021/jacsau.1c00025).

Labois, C.;Stempien, E.;Schneider, J.;Schaeffer-Reiss, C.;Bertsch, C.;Goddard, M. L.;Chong, J.
Comparative Study of Secreted Proteins, Enzymatic Activities of Wood Degradation and Stilbene Metabolization in Grapevine Botryosphaeria Dieback Fungi
Journal of Fungi, 2021, 7, 568. (10.3390/jof7070568).

Dalzon, B.; Devcic, J.; Bons, J.; Torres, A.; Diemer, H.; Ravanel, S.; Collin-Faure, V.; Cianferani, S.; Carapito, C.; Rabilloud, T.
A proteomic view of cellular responses of macrophages to copper when added as ion or as copper-polyacrylate complex
Journal of Proteomics, 2021, 239, 104178. (10.1016/j.jprot.2021.104178).

Cavazza, C.;Collin-Faure, V.;Perard, J.;Diemer, H.;Cianferani, S.;Rabilloud, T.;Darrouzet, E.
Proteomic analysis of Rhodospirillum rubrum after carbon monoxide exposure reveals an important effect on metallic cofactor biosynthesis
Journal of Proteomics, 2021, 250, 104389. (10.1016/j.jprot.2021.104389).

Picini, F.; Schneider, S.; Gavat, O.; Jentzsch, A. V.; Tan, J. J.; Maaloum, M.; Strub, J. M.; Tokunaga, S.; Lehn, J. M.; Moulin, E.; Giuseppone, N.
Supramolecular Polymerization of Triarylamine-Based Macrocycles into Electroactive Nanotubes
Journal of the American Chemical Society, 2021, 143(17), 6498-6504. (10.1021/jacs.1c00623).

Schleiss, C.; Carapito, R.; Fornecker, L. M.; Muller, L.; Paul, N.; Tahar, O.; Pichot, A.; Tavian, M.; Nicolae, A.; Miguet, L.; Mauvieux, L.; Herbrecht, R.; Cianferani, S.; Freund, J. N.; Carapito, C.; Maumy-Bertrand, M.; Bahram, S.; Bertrand, F.; Vallat, L.
Temporal multiomic modeling reveals a B-cell receptor proliferative program in chronic lymphocytic leukemia
Leukemia, 2021, 35(5), 1463-1474. (10.1038/s41375-021-01221-5).

Wagner-Rousset, E.;Colas, O.;Chenu, S.;Francois, Y. N.;Guillarme, D.;Cianferani, S.;Tsybin, Y. O.;Sjogren, J.;Delobel, A.;Beck, A.
Fast Afucosylation Profiling of Glycoengineered Antibody Subunits by Middle-Up Mass Spectrometry
Methods Mol Biol, 2021, 2271, 73-83. (10.1007/978-1-0716-1241-5_5).

Hirschler, A.;Carapito, C.;Maurer, L.;Zumsteg, J.;Villette, C.;Heintz, D.;Dahl, C.;Al-Nayal, A.;Sangal, V.;Mahmoud, H.;Van Dorsselaer, A.;Ismail, W.
Biodesulfurization Induces Reprogramming of Sulfur Metabolism in Rhodococcus qingshengii IGTS8: Proteomics and Untargeted Metabolomics
Microbiol Spectr, 2021, 9(2), e0069221. (10.1128/Spectrum.00692-21).

Postic, G.; Andreani, J.; Marcoux, J.; Reys, V.; Guerois, R.; Rey, J.; Mouton-Barbosa, E.; Vandenbrouck, Y.; Cianferani, S.; Burlet-Schiltz, O.; Labesse, G.; Tuffery, P.
Proteo3Dnet: a web server for the integration of structural information with interactomics data
Nucleic Acids Research, 2021, 49(W1), W567-W572. (10.1093/nar/gkab332).

Beinsteiner, Brice; Markov, Gabriel, V; Erb, Stéphane; Chebaro, Yassmine; McEwen, Alastair, G; Cianférani, Sarah; Laudet, Vincent; Moras, Dino; Billas, Isabelle, M L
A structural signature motif enlightens the origin and diversification of nuclear receptors
PLOS Genetics, 2021, 17(4), e1009492. (10.1371/journal.pgen.1009492).

Ramirez Rios, S.;Torres, A.;Diemer, H.;Collin-Faure, V.;Cianferani, S.;Lafanechere, L.;Rabilloud, T.
A proteomic-informed view of the changes induced by loss of cellular adherence: The example of mouse macrophages
PLOS One, 2021, 16, e0252450. (10.1371/journal.pone.0252450).

Delfosse, V.; Huet, T.; Harrus, D.; Granell, M.; Bourguet, M.; Gardia-Parege, C.; Chiavarina, B.; Grimaldi, M.; Le Mevel, S.; Blanc, P.; Huang, D.; Gruszczyk, J.; Demeneix, B.; Cianferani, S.; Fini, J. B.; Balaguer, P.; Bourguet, W.
Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118(1), e2020551118. (10.1073/pnas.2020551118).

Oerum, S.;Catala, M.;Bourguet, M.;Gilet, L.;Barraud, P.;Cianferani, S.;Condon, C.;Tisne, C.
Structural studies of RNase M5 reveal two-metal-ion supported two-step dsRNA cleavage for 5S rRNA maturation
RNA Biol, 2021, 18(11), 1996-2006. (10.1080/15476286.2021.1885896).

Azevedo-Favory, J.; Gaspin, C.; Ayadi, L.; Montacie, C.; Marchand, V.; Jobet, E.; Rompais, M.; Carapito, C.; Motorin, Y.; Saez-Vasquez, J.
Mapping rRNA 2′-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants
Rna Biology, 2021, 18(11), 1760-1777. (10.1080/15476286.2020.1869892).

Rady, T.;Mosser, M.;Nothisen, M.;Erb, S.;Dovgan, I.;Cianferani, S.;Wagner, A.;Chaubet, G.
Bicyclo[6.1.0]nonyne carboxylic acid for the production of stable molecular probes
Rsc Advances, 2021, 11, 36777-36780. (10.1039/d1ra07905k).

Carapito, R.;Li, R.;Helms, J.;Carapito, C.;Gujja, S.;Rolli, V.;Guimaraes, R.;Malagon-Lopez, J.;Spinnhirny, P.;Lederle, A.;Mohseninia, R.;Hirschler, A.;Muller, L.;Bastard, P.;Gervais, A.;Zhang, Q.;Danion, F.;Ruch, Y.;Schenck, M.;Collange, O.;Chamaraux-Tran, T. N.;Molitor, A.;Pichot, A.;Bernard, A.;Tahar, O.;Bibi-Triki, S.;Wu, H.;Paul, N.;Mayeur, S.;Larnicol, A.;Laumond, G.;Frappier, J.;Schmidt, S.;Hanauer, A.;Macquin, C.;Stemmelen, T.;Simons, M.;Mariette, X.;Hermine, O.;Fafi-Kremer, S.;Goichot, B.;Drenou, B.;Kuteifan, K.;Pottecher, J.;Mertes, P. M.;Kailasan, S.;Aman, M. J.;Pin, E.;Nilsson, P.;Thomas, A.;Viari, A.;Sanlaville, D.;Schneider, F.;Sibilia, J.;Tharaux, P. L.;Casanova, J. L.;Hansmann, Y.;Lidar, D.;Radosavljevic, M.;Gulcher, J. R.;Meziani, F.;Moog, C.;Chittenden, T. W.;Bahram, S.
Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort
Sci Transl Med, 2021, 14(628), eabj7521. (10.1126/scitranslmed.abj7521).

Deffieu, M. S.; Cesonyte, I.; Delalande, F.; Boncompain, G.; Dorobantu, C.; Song, E.; Lucansky, V.; Hirschler, A.; Cianferani, S.; Perez, F.; Carapito, C.; Gaudin, R.
Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway
Science Advances, 2021, 7(2), eaba7803. (10.1126/sciadv.aba7803).

Imbert, A.;Rompais, M.;Selloum, M.;Castelli, F.;Mouton-Barbosa, E.;Brandolini-Bunlon, M.;Chu-Van, E.;Joly, C.;Hirschler, A.;Roger, P.;Burger, T.;Leblanc, S.;Sorg, T.;Ouzia, S.;Vandenbrouck, Y.;Medigue, C.;Junot, C.;Ferro, M.;Pujos-Guillot, E.;de Peredo, A. G.;Fenaille, F.;Carapito, C.;Herault, Y.;Thevenot, E. A.
ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis
Scientific Data, 2021, 8, 311. (10.1038/s41597-021-01095-3).

Lehot, V.; Kuhn, I.; Nothisen, M.; Erb, S.; Kolodych, S.; Cianferani, S.; Chaubet, G.; Wagner, A.
Non-specific interactions of antibody-oligonucleotide conjugates with living cells
Scientific Reports, 2021, 11(1), 5881. (10.1038/s41598-021-85352-w).

Scavello, F.; Mutschler, A.; Helle, S.; Schneider, F.; Chasserot-Golaz, S.; Strub, J. M.; Cianferani, S.; Haikel, Y.; Metz-Boutigue, M. H.
Catestatin in innate immunity and Cateslytin-derived peptides against superbugs
Scientific Reports, 2021, 11(1), 15615. (10.1038/s41598-021-94749-6).

Giroud, S.; Chery, I.; Arrive, M.; Prost, M.; Zumsteg, J.; Heintz, D.; Evans, A. L.; Gauquelin-Koch, G.; Arnemo, J. M.; Swenson, J. E.; Lefai, E.; Bertile, F.; Simon, C.; Blanc, S.
Hibernating brown bears are protected against atherogenic dyslipidemia
Scientific Reports, 2021, 11(1), 18723. (10.1038/s41598-021-98085-7).

Botzanowski, T.; Hernandez-Alba, O.; Malissard, M.; Wagner-Rousset, E.; Desligniere, E.; Colas, O.; Haeuw, J. F.; Beck, A.; Cianferani, S.
Middle Level IM-MS and CIU Experiments for Improved Therapeutic Immunoglobulin Subclass Fingerprinting
Analytical Chemistry, 2020, 92(13), 8827-8835. (10.1021/acs.analchem.0c00293).

Desligniere, E.;Ehkirch, A.;Botzanowski, T.;Beck, A.;Hernandez-Alba, O.;Cianferani, S.
Toward Automation of Collision-Induced Unfolding Experiments through Online Size Exclusion Chromatography Coupled to Native Mass Spectrometry
Analytical Chemistry, 2020, 92, 12900-12908. (10.1021/acs.analchem.0c01426).

Boyer, C.; Cussonneau, L.; Brun, C.; Deval, C.; de Barros, J. P. P.; Chanon, S.; Bernoud-Hubac, N.; Daira, P.; Evans, A. L.; Arnemo, J. M.; Swenson, J. E.; Gauquelin-Koch, Guillemette; Simon, Chantal; Blanc, Stéphane; Combaret, L.; Bertile, Fabrice; Lefai, Etienne
Specific shifts in the endocannabinoid system in hibernating brown bears
Frontiers in Zoology, 2020, 17(1), 35. (10.1186/s12983-020-00380-y).

Ibrahim, Marianne; Wasselin, Thierry; Challet, Etienne; Van Dorsselaer, Alain; Le Maho, Yvon; Raclot, Thierry; Bertile, Fabrice
Transcriptional Changes Involved in Atrophying Muscles during Prolonged Fasting in Rats
International Journal of Molecular Sciences, 2020, 21(17), 5984. (10.3390/ijms21175984).

Pythoud, Nicolas; Bons, Joanna; Mijola, Geoffroy; Beck, Alain; Cianférani, Sarah; Carapito, Christine
Optimized Sample Preparation and Data Processing of Data-Independent Acquisition Methods for the Robust Quantification of Trace-Level Host Cell Protein Impurities in Antibody Drug Products
Journal of Proteome Research, 2020, 20(1), 923-931. (10.1021/acs.jproteome.0c00664).

Kenny, Helena C.; Tascher, Georg; Ziemianin, Anna; Rudwill, Floriane; Zahariev, Alexandre; Chery, Isabelle; Gauquelin-Koch, Guillemette; Barielle, Marie-Pierre; Heer, Martina; Blanc, Stéphane; O’Gorman, Donal; Bertile, Fabrice
Effectiveness of resistive vibration exercise and whey protein supplementation plus alkaline salt on the skeletal muscle proteome following 21 days of bedrest in healthy males
Journal of Proteome Research, 2020, 19, 3438-3451. (10.1021/acs.jproteome.0c00256).

Hernandez-Alba, O.;Ehkirch, A.;Beck, A.;Cianferani, S.
Analysis of ADCs by Native Mass Spectrometry
Methods Mol Biol, 2020, 2078, 197-211. (10.1007/978-1-4939-9929-3_13).

Perraud, Q.; Cantero, P.; Munier, M.; Hoegy, F.; Zill, N.; Gasser, V.; Mislin, G. L. A.; Ehret-Sabatier, L.; Schalk, I. J.
Phenotypic Adaptation of Pseudomonas aeruginosa in the Presence of Siderophore-Antibiotic Conjugates during Epithelial Cell Infection
Microorganisms, 2020, 8(11), 1820. (10.3390/microorganisms8111820).

Perraud, Quentin; Cantero, Paola; Roche, Béatrice; Gasser, Véronique; Normant, Vincent P; Kuhn, Lauriane; Hammann, Philippe; Mislin, Gaëtan L. A.; Ehret-Sabatier, Laurence; Schalk, Isabelle J
Phenotypic adaption of Pseudomonas aeruginosa by hacking siderophores produced by other microorganisms
Molecular & Cellular Proteomics, 2020, 19(4), 589-607. (10.1074/mcp.RA119.001829).

Lefeuvre, B.; Cantero, P.; Ehret-Sabatier, L.; Lenormand, C.; Barthel, C.; Po, C.; Parveen, N.; Grillon, A.; Jaulhac, B.; Boulanger, N.
Effects of topical corticosteroids and lidocaine on Borrelia burgdorferi sensu lato in mouse skin: potential impact to human clinical trials
Scientific Reports, 2020, 10(10552), 1. (10.1038/s41598-020-67440-5).

Nguyen, A.;Nguyen, D.;Phong Nguyen, T. X.;Sebastiani, M.;Dorr, S.;Hernandez-Alba, O.;Debaene, F.;Cianferani, S.;Heine, A.;Klebe, G.;Reuter, K.
The Importance of Charge in Perturbing the Aromatic Glue Stabilizing the Protein-Protein Interface of Homodimeric tRNA-Guanine Transglycosylase
ACS Chemical Biology, 2020, 15, 3021-3029. (10.1021/acschembio.0c00700).

Humbert, N.;Kovalenko, L.;Saladini, F.;Giannini, A.;Pires, M.;Botzanowski, T.;Cherenok, S.;Boudier, C.;Sharma, K. K.;Real, E.;Zaporozhets, O. A.;Cianferani, S.;Seguin-Devaux, C.;Poggialini, F.;Botta, M.;Zazzi, M.;Kalchenko, V. I.;Mori, M.;Mely, Y.
(Thia)calixarenephosphonic Acids as Potent Inhibitors of the Nucleic Acid Chaperone Activity of the HIV-1 Nucleocapsid Protein with a New Binding Mode and Multitarget Antiviral Activity
ACS Infectious Diseases, 2020, 6, 687-702. (10.1021/acsinfecdis.9b00290).

Chabrol, E.;Stojko, J.;Nicolas, A.;Botzanowski, T.;Fould, B.;Antoine, M.;Cianferani, S.;Ferry, G.;Boutin, J. A.
VHH characterization.Recombinant VHHs: Production, characterization and affinity
Analytical Biochemistry, 2020, 589, 113491. (10.1016/j.ab.2019.113491).

Duivelshof, B. L.;Desligniere, E.;Hernandez-Alba, O.;Ehkirch, A.;Toftevall, H.;Sjogren, J.;Cianferani, S.;Beck, A.;Guillarme, D.;D’Atri, V.
Glycan-Mediated Technology for Obtaining Homogeneous Site-Specific Conjugated Antibody-Drug Conjugates: Synthesis and Analytical Characterization by Using Complementary Middle-up LC/HRMS Analysis
Analytical Chemistry, 2020, 92, 8170-8177. (10.1021/acs.analchem.0c00282).

Allison, T. M.;Barran, P. E.;Cianferani, S.;Degiacomi, M. T.;Gabelica, V.;Grandori, R.;Marklund, E. G.;Menneteau, T.;Migas, L. G.;Politis, A.;Sharon, M.;Sobott, F.;Thalassinos, K.;Benesch, J. L. P.
Computational strategies and challenges for using native ion mobility mass spectrometry in biophysics and structural biology
Analytical Chemistry, 2020, 92(16), 10872-10880. (10.1021/acs.analchem.9b05791).

Allison, Timothy M.; Barran, Perdita; Benesch, Justin L. P.; Cianferani, Sarah; Degiacomi, Matteo T.; Gabelica, Valerie; Grandori, Rita; Marklund, Erik G.; Menneteau, Thomas; Migas, Lukasz G.; Politis, Argyris; Sharon, Michal; Sobott, Frank; Thalassinos, Konstantinos
Software Requirements for the Analysis and Interpretation of Native Ion Mobility Mass Spectrometry Data
Analytical Chemistry, 2020, 92(16), 10881-10890. (10.1021/acs.analchem.9b05792).

Tessier, R.; Nandi, R. K.; Dwyer, B. G.; Abegg, D.; Sornay, C.; Ceballos, J.; Erb, S.; Cianférani, S.; Wagner, A.; Chaubet, G.; Adibekian, A.; Waser, J.
Ethynylation of Cysteine Residues: From Peptides to Proteins in Vitro and in Living Cells
Angewandte Chemie-International Edition, 2020, 59(27), 10961-10970. (10.1002/anie.202002626).

Bouyssie, D.; Hesse, A. M.; Mouton-Barbosa, E.; Rompais, M.; Macron, C.; Carapito, C.; de Peredo, A. G.; Coute, Y.; Dupierris, V.; Burel, A.; Menetrey, J. P.; Kalaitzakis, A.; Poisat, J.; Romdhani, A.; Burlet-Schiltz, O.; Cianférani, S.; Garin, J.; Bruley, C.
Proline: an efficient and user-friendly software suite for large-scale proteomics
Bioinformatics, 2020, 36(10), 3148-3155. (10.1093/bioinformatics/btaa118).

Morizot, Romain; Hergalant, Sébastien; Piucco, Romain; Bouclet, Florian; Quinquenel, Anne; Dartigeas, Caroline; Augé, Hélène; Tausch, Eugen; Lomazzi, Sandra; Busby, Hélène; Tomowiak, Cécile; Leblond, Veronique; Thieblemont, Catherine; Cymbalista, Florence; Bene, Marie; Stilgenbauer, Stephan; Guieze, Romain; CARAPITO, Christine; Perrot, Aurore; Fornecker, Luc Mathieu; Feugier, Pierre; Broséus, Julien
Large-Scale Proteomics Identifies Distinct Signatures for Richter Syndrome and De Novo Diffuse Large B-Cell Lymphoma: A French Study from the Filo Group
Blood, 2020, 136(Supplement 1), 29-30. (10.1182/blood-2020-137061).

Spenlé, Caroline; Loustau, Thomas; Murdamoothoo, Devadarssen; Erne, William; Beghelli-de la Forest Divonne, Stéphanie; Veber, Romain; Petti, Luciana; Bourdely, Pierre; Mörgelin, Matthias; Brauchle, Eva Maria; Crémel, Gérard; Randrianarisoa, Vony; Camara, Abdouramane; Rekima, Samah; Schaub, Sebastian; Nouhen, Kelly; Imhof, Thomas; Hansen, Uwe; Paul, Nicodème; Carapito, Raphael; Pythoud, Nicolas; Hirschler, Aurélie; Carapito, Christine; Dumortier, Hélène; Mueller, Christopher; Koch, Manuel; Schenke-Layland, Katja; Kon, Shigeyuki; Sudaka, Anne; Anjuère, Fabienne; Van Obberghen-Schilling, Ellen; Orend, Gertraud
Tenascin-C orchestrates an immune suppressive tumor microenvironment in oral squamous cell carcinoma
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Sabou, M.;Doderer-Lang, C.;Leyer, C.;Konjic, A.;Kubina, S.;Lennon, S.;Rohr, O.;Viville, S.;Cianferani, S.;Candolfi, E.;Pfaff, A. W.;Brunet, J.
Toxoplasma gondii ROP16 kinase silences the cyclin B1 gene promoter by hijacking host cell UHRF1-dependent epigenetic pathways
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Sornay, C.; Hessmann, S.; Erb, S.; Dovgan, I.; Ehkirch, A.; Botzanowski, T.; Cianferani, S.; Wagner, A.; Chaubet, G.
Investigating Ugi/Passerini Multicomponent Reactions for the Site-Selective Conjugation of Native Trastuzumab
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Miret, J.; Camps, M.; Farras, M.; Roman, R.; Erb, S.; Cianférani, S.; Casablancas, A.; Cairo, J. J.
Insight on the Impact of the Reduction Step on the Site-Directed Conjugation of an Anti-HER2 Cysteine-Engineered Antibody
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Dalzon, Bastien; Aude-Garcia, Catherine; Diemer, Hélène; Bons, Joanna; Marie-Desvergne, Caroline; Pérard, Julien; Dubosson, Muriel; Collin-Faure, Véronique; CARAPITO, Christine; Cianférani, Sarah; Carrière, Marie; Rabilloud, Thierry
The longer the worse: a combined proteomic and targeted study of the long-term versus short-term effects of silver nanoparticles on macrophages
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N’Guessan, Koffi; Grzywa, Renata; Seren, Seda; Gabant, Guillaume; Juliano, Maria; Moniatte, Marc; Van Dorssaeler, Alain; Bieth, Joseph; Kellenberger, Christine; Gauthier, Francis; Wysocka, Magdalena; Lesner, Adam; SieNczyk, Marcin; Cadene, Martine; Korkmaz, Brice
Human proteinase 3 resistance to inhibition extends to alpha-2 macroglobulin
Febs Journal, 2020, 287, 4068Ð4081. (10.1111/febs.15229).

Bonnet, Muriel; Soulat, Julien; Bons, Joanna; Leger, Stephanie; De Koning, Leanne; Carapito, Christine; Picard, Brigitte
Quantification of biomarkers for beef meat qualities using a combination of Parallel Reaction Monitoring- and antibody-based proteomics
Food Chemistry, 2020, 317, 126376. (10.1016/j.foodchem.2020.126376).

Thompson, D.; Cognat, V.; Goodfellow, M.; Koechler, S.; Heintz, D.; Carapito, C.; Van Dorsselaer, A.; Mahmoud, H.; Sangal, V.; Ismail, W.
Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-BiodesulfurizingRhodococcusStrain IGTS8
Frontiers in Microbiology, 2020, 11, 1417. (10.3389/fmicb.2020.01417).

Laurens, Claire; Parmar, Anisha; Murphy, Enda; Carper, Deborah; Lair, Benjamin; Maes, Pauline; Vion, Julie; Boulet, Nathalie; Fontaine, Coralie; Marquès, Marie; Larrouy, Dominique; Harant, Isabelle; Thalamas, Claire; Montastier, Emilie; Caspar-Bauguil, Sylvie; Bourlier, Virginie; Tavernier, Geneviève; Grolleau, Jean-LOs; Bouloumié, Anne; Langin, Dominique; Viguerie, Nathalie; Bertile, Fabrice; Blanc, Stéphane; de Glisezinski, Isabelle; O’Gorman, Donal; Moro, Cedric
Growth and differentiation factor 15 is secreted by skeletal muscle during exercise and promotes lipolysis in humans
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Luu, Bryan E.; Lefai, Etienne; Giroud, Sylvain; Swenson, Jon E.; Chazarin, Blandine; Gauquelin-Koch, Guillemette; Arnemo, Jon M.; Evans, Alina L.; Bertile, Fabrice; Storey, Kenneth B.
MicroRNAs facilitate skeletal muscle maintenance and metabolic suppression in hibernating brown bears
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Patoli, D.; Mignotte, F.; Deckert, V.; Dusuel, A.; Dumont, A.; Rieu, A.; Jalil, A.; Van Dongen, K.; Bourgeois, T.; Gautier, T.; Magnani, C.; Le Guern, N.; Mandard, S.; Bastin, J.; Djouadi, F.; Schaeffer, C.; Guillaumot, N.; Narce, M.; Nguyen, M.; Guy, J.; Dargent, A.; Quenot, J. P.; Rialland, M.; Masson, D.; Auwerx, J.; Lagrost, L.; Thomas, C.
Inhibition of mitophagy drives macrophage activation and antibacterial defense during sepsis
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Castro, C. N.; Rosenzwajg, M.; Carapito, R.; Shahrooei, M.; Konantz, M.; Khan, A.; Miao, Z. C.; Gross, M.; Tranchant, T.; Radosavljevic, M.; Paul, N.; Stemmelen, T.; Pitoiset, F.; Hirschler, A.; Nespola, B.; Molitor, A.; Rolli, V.; Pichot, A.; Faletti, L. E.; Rinaldi, B.; Friant, S.; Mednikov, M.; Karauzum, H.; Aman, M. J.; Carapito, C.; Lengerke, C.; Ziaee, V.; Eyaid, W.; Ehl, S.; Alroqi, F.; Parvaneh, N.; Bahram, S.
NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation
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Wagner, E.;Colas, O.;Chenu, S.;Goyon, A.;Murisier, A.;Cianferani, S.;Francois, Y.;Fekete, S.;Guillarme, D.;D’Atri, V.;Beck, A.
Determination of size variants by CE-SDS for approved therapeutic antibodies: Key implications of subclasses and light chain specificities
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Postic, G.; Marcoux, J.; Reys, V.; Andreani, J.; Vandenbrouck, Y.; Bousquet, M. P.; Mouton-Barbosa, E.; Cianferani, S.; Burlet-Schiltz, O.; Guerois, R.; Labesse, G.; Tuffery, P.
Probing Protein Interaction Networks by Combining MS-Based Proteomics and Structural Data Integration
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Farras, M.; Miret, J.; Camps, M.; Roman, R.; Martinez, O.; Pujol, X.; Erb, S.; Ehkirch, A.; Cianférani, S.; Casablancas, A.; Cairo, J. J.
Homogeneous antibody-drug conjugates: DAR 2 anti-HER2 obtained by conjugation on isolated light chain followed by mAb assembly
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Wagner-Rousset, E.;Colas, O.;Francois, Y. N.;Heinisch, S.;Guillarme, D.;Cianferani, S.;Beck, A.
Drug Loading and Distribution of ADCs After Reduction or IdeS Digestion and Reduction
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Oerum, S.; Dendooven, T.; Catala, M.; Gilet, L.; Degut, C.; Trinquier, A.; Bourguet, M.; Barraud, P.; Cianferani, S.; Luisi, B.; Condon, C.; Tisne, C.
Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs
Molecular Cell, 2020, 80(2), 227-. (10.1016/j.molcel.2020.09.008).

Torres, A.; Dalzon, B.; Collin-Faure, V.; Diemer, H.; Fenel, D.; Schoehn, G.; Cianferani, S.; Carriere, M.; Rabilloud, T.
How Reversible Are the Effects of Fumed Silica on Macrophages? A Proteomics-Informed View
Nanomaterials, 2020, 10(10), 1939. (10.3390/nano10101939).

Ciudad, S.;Puig, E.;Botzanowski, T.;Meigooni, M.;Arango, A. S.;Do, J.;Mayzel, M.;Bayoumi, M.;Chaignepain, S.;Maglia, G.;Cianferani, S.;Orekhov, V.;Tajkhorshid, E.;Bardiaux, B.;Carulla, N.
Abeta(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage
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Osz, J.;McEwen, A. G.;Bourguet, M.;Przybilla, F.;Peluso-Iltis, C.;Poussin-Courmontagne, P.;Mely, Y.;Cianferani, S.;Jeffries, C. M.;Svergun, D. I.;Rochel, N.
Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR
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Belorusova, A. Y.;Bourguet, M.;Hessmann, S.;Chalhoub, S.;Kieffer, B.;Cianferani, S.;Rochel, N.
Molecular determinants of MED1 interaction with the DNA bound VDR-RXR heterodimer
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Lacoux, Caroline; Wacheul, Ludivine; Saraf, Kritika; Pythoud, Nicolas; Huvelle, Emmeline; Figaro, Sabine; Graille, Marc; Carapito, Christine; Lafontaine, Denis L; Heurgué-Hamard, Valérie
The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis
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Charles, L.; Mondal, T.; Greff, V.; Razzini, M.; Monnier, V.; Burel, A.; Carapito, C.; Lutz, J. F.
Optimal conditions for tandem mass spectrometric sequencing of information-containing nitrogen-substituted polyurethanes
Rapid Communications in Mass Spectrometry, 2020, 34(14), e8815. (10.1002/rcm.8815).

Dovgan, I.;Ehkirch, A.;Lehot, V.;Kuhn, I.;Koniev, O.;Kolodych, S.;Hentz, A.;Ripoll, M.;Ursuegui, S.;Nothisen, M.;Cianferani, S.;Wagner, A.
On the use of DNA as a linker in antibody-drug conjugates: synthesis, stability and in vitro potency
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Bernard, Quentin; Grillon, Antoine; Lenormand, Cedric; Ehret-Sabatier, Laurence; Boulanger, Nathalie
Skin Interface, a Key Player for Borrelia Multiplication and Persistence in Lyme Borreliosis
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Talagrand-Reboul, E.; Westermann, B.; Raess, M. A.; Schnell, G.; Cantero, P.; Barthel, C.; Ehret-Sabatier, Laurence; Jaulhac, B.; Boulanger, N.
Proteomic as an Exploratory Approach to Develop Vaccines Against Tick-Borne Diseases Using Lyme Borreliosis as a Test Case
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Chazarin, Blandine; Ziemianin, Anna; Evans, Alina L.; Meugnier, Emmanuelle; Loizon, Emmanuelle; Chery, Isabelle; Arnemo, Jon M.; Swenson, Jon E.; Gauquelin-Koch, Guillemette; Simon, Chantal; Blanc, Stéphane; Lefai, Etienne; Bertile, Fabrice
Limited Oxidative Stress Favors Resistance to Skeletal Muscle Atrophy in Hibernating Brown Bears (Ursus Arctos)
Antioxidants, 2019, 8(9), 334. (10.3390/antiox8090334).

Ibrahim, M.; Ayoub, D.; Wasselin, T.; Van Dorsselaer, Alain; Le Maho, Yvon; Raclot, Thierry; Bertile, Fabrice
Alterations in rat adipose tissue transcriptome and proteome in response to prolonged fasting
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Tascher, Georg; Burban, A.; Camus, S.; Plumel, Marine I.; Chanon, S.; Le Guevel, R.; Shevchenko, V.; Van Dorsselaer, Alain; Lefai, Etienne; Guguen-Guillouzo, C.; Bertile, Fabrice
In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes
Cells, 2019, 8(2), 192. (10.3390/cells8020192).

Tascher, Georg; Gerbaix, M.; Maes, P.; Chazarin, Blandine; Ghislin, S.; Antropova, E.; Vassilieva, G.; Ouzren-Zarhloul, N.; Gauquelin-Koch, Guillemette; Vico, L.; Frippiat, J. P.; Bertile, Fabrice
Analysis of femurs from mice embarked on board BION-M1 biosatellite reveals a decrease in immune cell development, including B cells, after 1 wk of recovery on Earth
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Chazarin, Blandine; Storey, Kenneth B.; Ziemianin, Anna; Chanon, Stéphanie; Plumel, Marine; Chery, Isabelle; Durand, Christine; Evans, Alina L.; Arnemo, Jon M.; Zedrosser, Andreas; Swenson, Jon E.; Gauquelin-Koch, Guillemette; Simon, Chantal; Blanc, Stéphane; Lefai, Etienne; Bertile, Fabrice
Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscle
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Plumel, Marine I.; Dumont, Stéphanie; Maes, Pauline; Sandu, C.; Felder-Schmittbuhl, M. P.; Challet, E.; Bertile, Fabrice
Circadian Analysis of the Mouse Cerebellum Proteome
International Journal of Molecular Sciences, 2019, 20, 1852. (10.3390/ijms20081852).

Quque, Martin; Bertile, Fabrice; Benhaim-Delarbre, Margaux; Deneubourg, J. L.; Sueur, Cédric; Criscuolo, François
Division of labour in the black garden ant (Lasius niger) leads to three distinct proteomes
Journal of Insect Physiology, 2019, 117, 103907. (10.1016/j.jinsphys.2019.103907).

Hernandez-Alba, O.; Houel, S.; Hessmann, S.; Erb, S.; Rabuka, D.; Huguet, R.; Josephs, J.; Beck, A.; Drake, P. M.; Cianférani, S.
A Case Study to Identify the Drug Conjugation Site of a Site-Specific Antibody-Drug-Conjugate Using Middle-Down Mass Spectrometry
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Muller, L.;Fornecker, L.;Cianferani, S.;Carapito, C.
Tube-Gel: A Fast and Effective Sample Preparation Method for High-Throughput Quantitative Proteomics
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Bons, J.; Macron, C.; Aude-Garcia, C.; Vaca-Jacome, S. A.; Rompais, M.; Cianférani, Sarah; Carapito, Christine; Rabilloud, T.
A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level
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Fornecker, L. M.; Muller, L.; Bertrand, F.; Paul, N.; Pichot, A.; Herbrecht, R.; Chenard, M. P.; Mauvieux, L.; Vallat, L.; Bahram, S.; Cianférani, S.; Carapito, R.; Carapito, C.
Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma
Scientific Reports, 2019, 9, 895. (10.1038/s41598-018-37273-4).

Boeuf, A.; Schnell, G.; Bernard, Q.; Kern, A.; Westermann, B.; Ehret-Sabatier, L.; Grillon, A.; Schramm, F.; Jaulhac, B.; Boulanger, N.
Dissociating effect of salivary gland extract from Ixodes ricinus on human fibroblasts: Potential impact on Borrelia transmission
Ticks and Tick-Borne Diseases, 2019, 10(2), 433-441. (10.1016/j.ttbdis.2018.12.005).

Niazi, A. K.; Bariat, L.; Riondet, C.; Carapito, Christine; Mhamdi, A.; Noctor, G.; Reichheld, J. P.
Cytosolic Isocitrate Dehydrogenase from Arabidopsis thaliana Is Regulated by Glutathionylation
Antioxidants, 2019, 8(1), 16. (10.3390/antiox8010016).

Schneider, F.;Dureau, A. F.;Helle, S.;Betscha, C.;Senger, B.;Cremel, G.;Boulmedais, F.;Strub, J. M.;Corti, A.;Meyer, N.;Guillot, M.;Schaaf, P.;Metz-Boutigue, M. H.
A Pilot Study on Continuous Infusion of 4% Albumin in Critically Ill Patients: Impact on Nosocomial Infection via a Reduction Mechanism for Oxidized Substrates
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Hyenne, V., Ghoroghi, S., Collot, M., Bons, J., Follain, G., Harlepp, S., Mary, B., Bauer, J., Mercier, L., Busnelli, I., Lefebvre, O., Fekonja, N., Garcia-Leon, M. J., Machado, P., Delalande, F., Lopez, A. A., Silva, S. G., Verweij, F. J., van Niel, G., Djouad, F., Peinado, H., Carapito, C., Klymchenko, A. S. and Goetz, J. G
Studying the Fate of Tumor Extracellular Vesicles at High Spatiotemporal Resolution Using the Zebrafish Embryo
Developmental Cell, 2019, 48(4), 554-572 e557. (10.1016/j.devcel.2019.01.014).

Dalzon, Bastien; Torres, Anaelle; Diemer, Helene; Ravanel, Stephane; Collin-Faure, Veronique; Pernet-Gallay, Karin; Jouneau, Pierre-Henri; Bourguignon, Jacques; Cianférani, Sarah; Carriere, Marie; Aude-Garcia, Catherine; Rabilloud, Thierry
How reversible are the effects of silver nanoparticles on macrophages? A proteomic-instructed view
Environmental Science-Nano, 2019, 6(10), 3133-3157. (10.1039/c9en00408d).

Baxter, Paul N. W.; Al Ouahabi, Abdelaziz; Karmazin, Lydia; Varnek, Alexandre; Strub, Jean-Marc; Cianférani, Sarah
An Investigation into the Stephens-Castro Synthesis of Dehydrotriaryl 12 annulenes: Factors Influencing the Cyclotrimerization
European Journal of Organic Chemistry, 2019, 40, 6783-6795. (10.1002/ejoc.201901053).

Giroud, Sylvain; Chery, Isabelle; Bertile, Fabrice; Bertrand-Michel, Justine; Tascher, Georg; Gauquelin-Koch, Guillemette; Arnemo, Jon M.; Swenson, Jon E.; Singh, Navinder J.; Lefai, Etienne; Evans, Aline L.; Simon, Chantal; Blanc, Stéphane
Lipidomics Reveals Seasonal Shifts in a Large-Bodied Hibernator, the Brown Bear
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Sanchez, Cecilia P.; Cubel, Sonia Moliner; Nyboer, Britta; Jankowska-Doellken, Monika; Schaeffer-Reiss, Christine; Ayoub, Daniel; Planelles, Gabrielle; Lanzer, Michael
Phosphomimetic substitution at Ser-33 of the chloroquine resistance transporter PfCRT reconstitutes drug responses in Plasmodium falciparum
Journal of Biological Chemistry, 2019, 294(34), 12766-12778. (10.1074/jbc.RA119.009464).

Hammi, I.; Amensag, Kamar; Ennahar, S.; Delalande, F.; Marchioni, E.; Cianferani, S.; Belkhou, R.
Native production of pediocin PA-1 by Enterococcus faecium E16 isolated from goats’ cheese
Journal of Food and Nutrition Research, 2019, 58, 44774. ().

Strassel, Catherine; Magiera, Maria, M.; Dupuis, Arnaud; Batzenschlager, Morgane; Hovasse, Agnes; Pleines, Irina; Gueguen, Paul; Eckly, Anita; Moog, Sylvie; Mallo, Lea; Kimmerlin, Quentin; Chappaz, Stephane; Strub, Jean-Marc; Kathiresan, Natarajan; De La Salle, Henri; Van Dorsselaer, Alain; Férec, Claude; Py, Jean-Yves; Gachet, Christian; Schaeffer-Reiss, Christine; Kile, Benjamin, T; Janke, Carsten; Lanza, François
An essential role for _4A-tubulin in platelet biogenesis
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Groysbeck, N.; Stoessel, A.; Donzeau, M.; da Silva, E. C.; Lehmann, M.; Strub, J. M.; Cianférani, Sarah; Dembele, K.; Zuber, G.
Synthesis and biological evaluation of 2.4nm thiolate-protected gold nanoparticles conjugated to Cetuximab for targeting glioblastoma cancer cells via the EGFR
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Rochel, N.;Krucker, C.;Coutos-Thevenot, L.;Osz, J.;Zhang, R.;Guyon, E.;Zita, W.;Vanthong, S.;Hernandez, O. A.;Bourguet, M.;Badawy, K. A.;Dufour, F.;Peluso-Iltis, C.;Heckler-Beji, S.;Dejaegere, A.;Kamoun, A.;de Reynies, A.;Neuzillet, Y.;RebOssou, S.;Beraud, C.;Lang, H.;Massfelder, T.;Allory, Y.;Cianferani, S.;Stote, R. H.;Radvanyi, F.;Bernard-Pierrot, I.
Recurrent activating mutations of PPARgamma associated with luminal bladder tumors
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Ayala-Nunez, Nilda Vanesa; Follain, Gautier; Delalande, Franois; Hirschler, Aurlie; Partiot, Emma; Hale, Gillian L.; Bollweg, Brigid C.; Roels, Judith; Chazal, Maxime; Bakoa, Florian; Carocci, Margot; Bourdoulous, Sandrine; Faklaris, Orestis; Zaki, Sherif R.; Eckly, Anita; Uring-Lambert, Batrice; Doussau, Frdric; Cianférani, Sarah; Carapito, Christine; Jacobs, Frank M. J.; Jouvenet, Nolwenn; Goetz, Jacky G.; Gaudin, Raphael
Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells
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Gervason, S.; Larkem, D.; Ben Mansour, A.; Botzanowski, T.; Muller, C. S.; Pecqueur, L.; Le Pavec, G.; Delaunay-Moisan, A.; Brun, O.; Agramunt, J.; Grandas, A.; Fontecave, M.; Schunmann, V.; Cianférani, Sarah; Sizun, C.; Toledano, M. B.; D’Autreaux, B.
Physiologically relevant reconstitution of iron-sulfur cluster biosynthesis uncovers persulfide-processing functions of ferredoxin-2 and frataxin
Nature Communications, 2019, 10, 3566. (10.1038/s41467-019-11470-9).

Boutin, J. A.; Tartar, A. L.; van Dorsselaer, A.; Vaudry, H.
General lack of structural characterization of chemically synthesized long peptides
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Hartmann, L.; Botzanowski, T.; Galibert, M.; Jullian, M.; Chabrol, E.; Zeder-Lutz, G.; Kugler, V.; Stojko, J.; Strub, J. M.; Ferry, G.; Frankiewicz, L.; Puget, K.; Wagner, R.; Cianférani, S.; Boutin, J. A.
VHH characterization. Comparison of recombinant with chemically synthesized anti-HER2 VHH
Protein Science, 2019, 28(10), 1865-1879. (10.1002/pro.3712).

Dalzon, Bastien; Bons, Joanna; Diemer, Hélène; Collin-Faure, Véronique; Marie-Desvergne, Caroline; Dubosson, Muriel; Cianférani, Sarah; Carapito, Christine; Rabilloud, Thierry
A Proteomic View of Cellular Responses to Anticancer Quinoline-Copper Complexes
Proteomes, 2019, 7(2), E26. (10.3390/proteomes7020026).

Ehkirch, A.;D’Atri, V.;Rouviere, F.;Hernandez-Alba, O.;Goyon, A.;Colas, O.;Sarrut, M.;Beck, A.;Guillarme, D.;Heinisch, S.;Cianferani, S.
An Online Four-Dimensional HICxSEC-IMxMS Methodology for Proof-of-Concept Characterization of Antibody Drug Conjugates
Analytical Chemistry, 2018, 90, 1578-1586. (10.1021/acs.analchem.7b02110).

Husson, G.; Delangle, A.; O’Hara, J.; Cianférani, S.; Gervais, A.; Van Dorsselaer, A.; Bracewell, D.; Carapito, C.
Dual Data-Independent Acquisition Approach Combining Global HCP Profiling and Absolute Quantification of Key Impurities during Bioprocess Development
Analytical Chemistry, 2018, 90(2), 1241-1247. (10.1021/acs.analchem.7b03965).

Hernandez-Alba, O.;Wagner-Rousset, E.;Beck, A.;Cianferani, S.
Native Mass Spectrometry, Ion Mobility, and Collision-Induced Unfolding for Conformational Characterization of IgG4 Monoclonal Antibodies
Analytical Chemistry, 2018, 90, 8865-8872. (10.1021/acs.analchem.8b00912).

Ehkirch, A.;Goyon, A.;Hernandez-Alba, O.;Rouviere, F.;D’Atri, V.;Dreyfus, C.;Haeuw, J. F.;Diemer, H.;Beck, A.;Heinisch, S.;Guillarme, D.;Cianferani, S.
A Novel Online Four-Dimensional SECxSEC-IMxMS Methodology for Characterization of Monoclonal Antibody Size Variants
Analytical Chemistry, 2018, 90, 13929-13937. (10.1021/acs.analchem.8b03333).

Salaam, J.; Tabti, L.; Bahamyirou, S.; Lecointre, A.; Alba, O. H.; Jeannin, O.; Camerel, F.; Cianférani, S.; Bentouhami, E.; Nonat, A. M.; Charbonniere, L. J.
Formation of Mono- and Polynuclear Luminescent Lanthanide Complexes based on the Coordination of Preorganized Phosphonated Pyridines
Inorganic Chemistry, 2018, 57(10), 6095-6106. (10.1021/acs.inorgchem.8b00666).

Ehkirch, A.;Hernandez-Alba, O.;Colas, O.;Beck, A.;Guillarme, D.;Cianferani, S.
Hyphenation of size exclusion chromatography to native ion mobility mass spectrometry for the analytical characterization of therapeutic antibodies and related products
Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 2018, 1086, 176-183. (10.1016/j.jchromb.2018.04.010).

Bibi-Triki, S.; Husson, G.; Maucourt, B.; Vuilleumier, S.; Carapito, C.; Bringel, F.
N-terminome and proteogenomic analysis of the Methylobacterium extorquens DM4 reference strain for dichloromethane utilization
Journal of Proteomics, 2018, 179, 131-139. (10.1016/j.jprot.2018.03.012).

Criscuolo, François; Sorci, Gabriele; Benhaim-Delarbre, Margaux; Zahn, Sandrine; Faivre, Bruno; Bertile, Fabrice
Age-related response to an acute innate immune challenge in mice: proteomics reveals a telomere maintenance-related cost
Proceedings of the Royal Society B-Biological Sciences, 2018, 285(1892), 20181877. (10.1098/rspb.2018.1877).

Muller, L.; Fornecker, L.; Chion, M.; Van Dorsselaer, A.; Cianférani, S.; Rabilloud, T.; Carapito, C.
Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics
Scientific Reports, 2018, 8, 8260. (10.1038/s41598-018-26600-4).

Desplancq, D.;Groysbeck, N.;Chiper, M.;Weiss, E.;Frisch, B.;Strub, J. M.;Cianferani, S.;Zafeiratos, S.;Moeglin, E.;Holy, X.;Favier, A. L.;De Carlo, S.;Schultz, P.;Spehner, D.;Zuber, G.
Cytosolic Diffusion and Peptide-Assisted Nuclear Shuttling of Peptide-Substituted Circa 102 Gold Atom Nanoclusters in Living Cells
Acs Applied Nano Materials, 2018, 1, 4236-4246. (10.1021/acsanm.8b00988).

Mori, M.;Kovalenko, L.;Malancona, S.;Saladini, F.;De Forni, D.;Pires, M.;Humbert, N.;Real, E.;Botzanowski, T.;Cianférani, S.;Giannini, A.;Dasso Lang, M.;Cugia, G.;Poddesu, B.;Lori, F.;Zazzi, M.;Harper, S.;Summa, V.;Mely, Y.;Botta, M.
Structure-Based Identification of HIV-1 Nucleocapsid Protein Inhibitors Active against Wild-Type and Drug-Resistant HIV-1 Strains.
ACS Chemical Biology, 2018, 13, 253-266.. (10.1021/acschembio.7b00907).

Garcia, L.; Girod, M.; Rompais, M.; Dugourd, P.; Carapito, C.; Lemoine, J.
Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset
Analytical Chemistry, 2018, 90(6), 3928-3935. (10.1021/acs.analchem.7b04821).

Cavallo, G.; Poyer, S.; Amalian, J. A.; Dufour, F.; Burel, A.; Carapito, C.; Charles, L.; Lutz, J. F.
Cleavable Binary Dyads: Simplifying Data Extraction and Increasing Storage Density in Digital Polymers
Angewandte Chemie-International Edition, 2018, 57(21), 6266-6269. (10.1002/anie.201803027).

Ehrmann, F.;Kalim, J.;Pfaffeneder, T.;Bernet, B.;Hohn, C.;Schäfer, E.;Botzanowski, T.;Cianférani, S.;Heine, A.;Reuter, K.;Diederich, F.;Klebe, G.
Swapping Interface Contacts in the Homodimeric tRNA Guanine Transglycosylase: An Option for Functional Regulation.
Angewandte Chemie-International Edition, 2018, 57, 10085-10090.. (10.1002/anie.201804627).

Carapito, R.; Carapito, C.; Morlon, A.; Paul, N.; Jacome, A. S. V.; Alsaleh, G.; Rolli, V.; Tahar, O.; Aouadi, I.; Rompais, M.; Delalande, F.; Pichot, A.; Georgel, P.; Messer, L.; Sibilia, J.; Cianférani, S.; Van Dorsselaer, A.; Bahram, S.
Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency
Annals of the Rheumatic Diseases, 2018, 77(11), 1675-1687. (10.1136/annrheumdis-2018-213524).

Behrens, C.;Biela, I.;Petiot-Bécard, S.;Botzanowski, T.;Cianférani, S.;Sager, C.;Klebe, G.;Heine, A.;Reuter, K.
Homodimer Architecture of QTRT2, the Noncatalytic Subunit of the Eukaryotic tRNA-Guanine Transglycosylase.
Biochemistry, 2018, 57, 3953-3965.. (10.1021/acs.biochem.8b00294).

Mons, C.;Botzanowski, T.;Nikolaev, A.;Hellwig, P.;Cianférani, S.;Lescop, E.;Bouton, C.;Golinelli-Cohen, M.
The H2O2-Resistant Fe-S Redox Switch MitoNEET Acts as a pH Sensor To Repair Stress-Damaged Fe-S Protein.
Biochemistry, 2018, 57, 5616-5628. . (10.1021/acs.biochem.8b00777).

Grzela, R.; Nusbaum, J.; Fieulaine, S.; Lavecchia, F.; Desmadril, M.; Nhiri, N.; Van Dorsselaer, Alain; Cianférani, Sarah; Jacquet, E.; Meinnel, T.; Giglione, C.
Peptide deformylases from Vibrio parahaemolyticus phage and bacteria display similar deformylase activity and inhibitor binding clefts
Biochimica Et Biophysica Acta-Proteins and Proteomics, 2018, 1866(2), 348-355. (10.1016/j.bbapap.2017.10.007).

Weinsanto, I.; Laux-Biehlmann, A.; Mouheiche, J.; Maduna, T.; Delalande, F.; Chavant, V.; Gabel, F.; Darbon, P.; Charlet, A.; Poisbeau, P.; Lamshoft, M.; Van Dorsselaer, A.; Cianférani, S.; Parat, M. O.; Goumon, Y.
Stable isotope-labelled morphine to study in vivo central and peripheral morphine glucuronidation and brain transport in tolerant mice
British Journal of Pharmacology, 2018, 175(19), 3844-3856. (10.1111/bph.14454).

Coulter, M. E.; Dorobantu, C. M.; Lodewijk, G. A.; Delalande, F.; Cianférani, S.; Ganesh, V. S.; Smith, R. S.; Lim, E. T.; Xu, C. S.; Pang, S.; Wong, E. T.; Lidov, H. G. W.; Calicchio, M. L.; Yang, E.; Gonzalez, D. M.; Schlaeger, T. M.; Mochida, G. H.; Hess, H.; Lee, W. A.; Lehtinen, M. K.; Kirchhausen, T.; Haussler, D.; Jacobs, F. M. J.; Gaudin, R.; Walsh, C. A.
The ESCRT-III Protein CHMP1A Mediates Secretion of Sonic Hedgehog on a Distinctive Subtype of Extracellular Vesicles
Cell Reports, 2018, 24(4), 973-986 e8. (10.1016/j.celrep.2018.06.100).

Weinsanto, I.; Mouheiche, J.; Laux-Biehlmann, A.; Delalande, F.; Marquette, A.; Chavant, V.; Gabel, F.; Cianférani, Sarah; Charlet, A.; Parat, M. O.; Goumon, Y.
Morphine Binds Creatine Kinase B and Inhibits Its Activity
Frontiers in Cellular Neuroscience, 2018, 12, 464. (10.3389/fncel.2018.00464).

Ploton, M.; Mazuy, C.; Gheeraert, C.; Dubois, V.; Berthier, A.; Dubois-Chevalier, J.; Marechal, X.; Bantubungi, K.; Diemer, H.; Cianférani, Sarah; Strub, J. M.; Helleboid-Chapman, A.; Eeckhoute, J.; Staels, B.; Lefebvre, P.
The nuclear bile acid receptor FXR is a PKA- and FOXA2-sensitive activator of fasting hepatic gluconeogenesis
Journal of Hepatology, 2018, 69(5), 1099-1109. (10.1016/j.jhep.2018.06.022).

D’Atri, V.;Causon, T.;Hernandez-Alba, O.;Mutabazi, A.;Veuthey, J. L.;Cianferani, S.;Guillarme, D.
Adding a new separation dimension to MS and LC-MS: What is the utility of ion mobility spectrometry?
Journal of Separation Science, 2018, 41, 20-67. (10.1002/jssc.201700919).

Koniev, O.;Dovgan, I.;Renoux, B.;Ehkirch, A.;Eberova, J.;Cianférani, S.;Kolodych, S.;Papot, S.;Wagner, A.
Reduction-rebridging strategy for the preparation of ADPN-based antibody-drug conjugates.
Medchemcomm., 2018, 9, 827-830.. (10.1039/c8md00141c).

Issa, N.; Guillaumot, N.; Lauret, E.; Matt, N.; Schaeffer-Reiss, C.; Van Dorsselaer, A.; Reichhart, J. M.; Veillard, F.
The Circulating Protease Persephone Is an Immune Sensor for Microbial Proteolytic Activities Upstream of the Drosophila Toll Pathway
Molecular Cell, 2018, 69(4), 539-+. (10.1016/j.molcel.2018.01.029).

Maurizy, C.;Quinternet, M.;Abel, Y.;Verheggen, C.;Santo, P.;Bourguet, M.;Paiva, A.;Bragantini, B.;Chagot, M.;Robert, M.;Abeza, C.;Fabre, P.;Fort, P.;Vandermoere, F.;Sousa, P.;Rain, J.;Charpentier, B.;Cianférani, S.;Bandeiras, T.;Pradet-Balade, B.;Manival, X.;Bertrand, E.
The RPAP3-Cterminal domain identifies R2TP-like quaternary chaperones.
Nature Communications, 2018, 9, 2093.. (10.1038/s41467-018-04431-1).

Chopard, C.; Tong, P. B. V.; Toth, P.; Schatz, M.; Yezid, H.; Debaisieux, S.; Mettling, C.; Gross, A.; Pugniere, M.; Tu, A.; Strub, J. M.; Mesnard, J. M.; Vitale, N.; Beaumelle, B.
Cyclophilin A enables specific HIV-1 Tat palmitoylation and accumulation in uninfected cells
Nature Communications, 2018, 9, 2251. (10.1038/s41467-018-04674-y).

van Tran, N.;Muller, L.;Ross, R.;Lestini, R.;Létoquart, J.;Ulryck, N.;Limbach, P.;de Crécy-Lagard, V.;Cianférani, S.;Graille, M.
Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes.
Nucleic Acids Research, 2018, 46, 8483-8499. . (10.1093/nar/gky638).

Dovgan, I.; Erb, S.; Hessmann, S.; Ursuegui, S.; Michel, C.; Muller, C.; Chaubet, G.; Cianférani, S.; Wagner, A.
Arginine-selective bioconjugation with 4-azidophenyl glyoxal: application to the single and dual functionalisation of native antibodies
Organic & Biomolecular Chemistry, 2018, 16(8), 1305-1311. (10.1039/c7ob02844j).

Prudent, R.; Demoncheaux, N.; Diemer, H.; Collin-Faure, V.; Kapur, R.; Paublant, F.; Lafanechere, L.; Cianférani, S.; Rabilloud, T.
A quantitative proteomic analysis of cofilin phosphorylation in myeloid cells and its modulation using the LIM kinase inhibitor Pyr1
PLOS One, 2018, 13(12), 17. (10.1371/journal.pone.0208979).

Berthier, A.; Vinod, M.; Porez, G.; Steenackers, A.; Alexandre, J.; Yamakawa, N.; Gheeraert, C.; Ploton, M.; Marechal, X.; Dubois-Chevalier, J.; Hovasse, A.; Schaeffer-Reiss, C.; Cianférani, S.; Rolando, C.; Bray, F.; Duez, H.; Eeckhoute, J.; Lefebvre, T.; Staels, B.; Lefebvre, P.
Combinatorial regulation of hepatic cytoplasmic signaling and nuclear transcriptional events by the OGT/REV-ERB alpha complex
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115(47), E11033-E11042. (10.1073/pnas.1805397115).

Giroud, Sylvain; Evans, Alina; Isabelle, Chery; Bertile, Fabrice; Tascher, Georg; Bertrand-Michel, Justine; Gauquelin-Koch, Guillemette; Arnemo, Jon; Swenson, Jon; Lefai, Etienne; Blanc, Stéphane; Simon, Chantal
Seasonal changes in eicosanoid metabolism in the brown bear
Science of Nature, 2018, 105(9-10), 58. (10.1007/s00114-018-1583-8).

Dartevelle, P.; Ehlinger, C.; Zaet, A.; Boehler, C.; Rabineau, M.; Westermann, B.; Strub, J. M.; Cianférani, Sarah; Haikel, Y.; Metz-Boutigue, M. H.; Marban, C.
D-Cateslytin: a new antifungal agent for the treatment of oral Candida albicans associated infections
Scientific Reports, 2018, 8(1), 9235. (10.1038/s41598-018-27417-x).

Chanon, Stéphanie; Chazarin, Blandine; Toubhans, Benoit; Durand, Christine; Chery, Isabelle; Robert, Maud; Vieille-Marchiset, Aurélie; Swenson, Jon E.; Zedrosser, Andreas; Evans, A. L.; Brunberg, Sven; Arnemo, Jon M.; Gauquelin-Koch, Guillemette; Storey, Kenneth B.; Simon, Chantal; Blanc, Stéphane; Bertile, Fabrice; Lefai, Etienne
Proteolysis inhibition by winter bear serum leads to increased protein content in human muscle cells
Scientific Reports, 2018, 8, 5525. (10.1038/s41598-018-23891-5).

Henri, J.;Chagot, M.;Bourguet, M.;Abel, Y.;Terral, G.;Maurizy, C.;Aigueperse, C.;Georgescauld, F.;Vandermoere, F.;Saint-Fort, R.;Behm-Ansmant, I.;Charpentier, B.;Pradet-Balade, B.;Verheggen, C.;Bertrand, E.;Meyer, P.;Cianférani, S.;Manival, X.;Quinternet, M.
Deep Structural Analysis of RPAP3 and PIH1D1, Two Components of the HSP90 Co-chaperone R2TP Complex.
Structure, 2018, 26, 1196-1209.e1198.. (10.1016/j.str.2018.06.002).

Lanshoeft, C.;Cianférani, S.;Heudi, O.
Generic Hybrid Ligand Binding Assay Liquid Chromatography High-Resolution Mass Spectrometry-Based Workflow for Multiplexed Human Immunoglobulin G1 Quantification at the Intact Protein Level: Application to Preclinical Pharmacokinetic Studies.
Analytical Chemistry, 2017, 89, 2628-2635.. (10.1021/acs.analchem.6b04997).

Stojko, J.; Dupin, A.; Chaignepain, S.; Beaurepaire, L.; Vallet-Courbin, A.; Van Dorsselaer, Alain; Schmitter, J. M.; Minvielle-Sebastia, L.; Fribourg, S.; Cianférani, Sarah
Structural characterization of the yeast CF IA complex through a combination of mass spectrometry approaches
International Journal of Mass Spectrometry, 2017, 420, 57-66. (10.1016/j.ijms.2016.08.005).

Carapito, C.; Duek, P.; Macron, C.; Seffals, M.; Rondel, K.; Delalande, F.; Lindskog, C.; Freour, T.; Vandenbrouck, Y.; Lane, L.; Pineau, C.
Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods
Journal of Proteome Research, 2017, 16(12), 4340-4351. (10.1021/acs.jproteome.7b00374).

Tascher, Georg; Brioche, Thomas; Maes, Pauline; Chopard, Angèle; O’Gorman, Donal; Gauquelin-Koch, Guillemette; Blanc, Stéphane; Bertile, Fabrice
Proteome-wide adaptations of mouse skeletal muscles during a full month in space
Journal of Proteome Research, 2017, 16(7), 2623-2638. (10.1021/acs.jproteome.7b00201).

Botzanowski, T.; Erb, S.; Hernandez-Alba, O.; Ehkirch, A.; Colas, O.; Wagner-Rousset, E.; Rabuka, D.; Beck, A.; Drake, P. M.; Cianférani, Sarah
Insights from native mass spectrometry approaches for top- and middle- level characterization of site-specific antibody-drug conjugates
Mabs, 2017, 9(5), 801-811. (10.1080/19420862.2017.1316914).

Terral, G.;Champion, T.;Debaene, F.;Colas, O.;Bourguet, M.;Wagner-Rousset, E.;Corvaia, N.;Beck, A.;Cianferani, S.
Epitope characterization of anti-JAM-A antibodies using orthogonal mass spectrometry and surface plasmon resonance approaches.
Mabs, 2017, 9, 1317-1326. (10.1080/19420862.2017.1380762).

Burel, A.; Carapito, C.; Lutz, J. F.; Charles, L.
MS-DECODER: Milliseconds Sequencing of Coded Polymers
Macromolecules, 2017, 50(20), 8290-8296. (10.1021/acs.macromol.7b01737).

Carapito, Christine; Kuhn, L.; Karim, L.; Rompais, Magali; Rabilloud, T.; Schwenzer, H.; Sissler, M.
Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases
Methods, 2017, 113, 111-119. (10.1016/j.ymeth.2016.10.012).

Westermann, B.;Jacome, A. S. V.;Rompais, M.;Carapito, C.;Schaeffer-Reiss, C.
Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification
Methods Mol Biol, 2017, 1574, 77-90. (10.1007/978-1-4939-6850-3_6).

Roux, Amandine; Gillet, Raphael; Huclier-Markai, Sandrine; Ehret-Sabatier, Laurence; Charbonniere, Loic J.; Nonat, Aline M.
Bifunctional bispidine derivatives for copper-64 labelling and positron emission tomography
Organic & Biomolecular Chemistry, 2017, 15(6), 1475-1483. (10.1039/C6OB02712A).

Kadek, A.;Kavan, D.;Marcoux, J.;Stojko, J.;Felice, A.;Cianférani, S.;Ludwig, R.;Halada, P.;Man, P.
Interdomain electron transfer in cellobiose dehydrogenase is governed by surface electrostatics.
Biochim Biophys Acta., 2017, 1861, 157-167. (10.1016/j.bbagen.2016.11.016).

Dovgan, I.; Ursuegui, S.; Erb, S.; Miche, C.; Kolodych, S.; Cianférani, S.; Wagner, A.
Acyl Fluorides: Fast, Efficient, and Versatile Lysine-Based Protein Conjugation via Plug-and-Play Strategy
Bioconjugate Chemistry, 2017, 28(5), 1452-1457. (10.1021/acs.bloconjchem.7b00141).

Gissot, Mathieu; Hovasse, Agnès; Chaloin, Laurent; Schaeffer-Reiss, Christine; Van Dorsselaer, Alain; Tomavo, Stanislas
An evolutionary conserved zinc finger protein is involved in Toxoplasma gondii mRNA nuclear export
Cellular Microbiology, 2017, 19(2), e12644. (10.1111/cmi.12644).

Paleari, R.; Caruso, D.; Kaiser, P.; Arsene, C. G.; Schaeffer-Reiss, C.; Van Dorsselaer, A.; Bisse, E.; Ospina, M.; De Jesus, V. R.; Wild, B.; Mosca, A.; Ifcc Working Grp Standardisation
Developing a reference system for the IFCC standardization of HbA(2)
Clinica Chimica Acta, 2017, 467, 21-26. (10.1016/j.cca.2016.05.023).

Argemi, X.; Prevost, G.; Riegel, P.; Keller, D.; Meyer, N.; Baldeyrou, M.; DOri, N.; Lefebvre, N.; Meghit, K.; Oustau, C. R.; Christmann, D.; Cianférani, S.; Strub, J. M.; Hansmann, Y.
VISLISI trial, a prospective clinical study allowing identification of a new metalloprotease and putative virulence factor from Staphylococcus lugdunensis
Clinical Microbiology and Infection, 2017, 23(5), 334.e1-334.e8. (10.1016/j.cmi.2016.12.018).

Kolodych, S.; Michel, C.; Delacroix, S.; Koniev, O.; Ehkirch, A.; Eberova, J.; Cianférani, S.; Renoux, B.; Krezel, W.; Poinot, P.; Muller, C. D.; Papot, S.; Wagner, A.
Development and evaluation of beta-galactosidase-sensitive antibody-drug conjugates
European Journal of Medicinal Chemistry, 2017, 142, 376-382. (10.1016/j.ejmech.2017.08.008).

Baxter, P. N. W.;Karmazin, L.;DeCian, A.;Varnek, A.;Gisselbrecht, J.-P.;Strub, J.-M.;Cianferani, S.
A Direct One-Pot Synthesis of Asymmetric Dehydrobenzopyrido-[12]annulenes and Their Physicochemical Properties
European Journal of Organic Chemistry, 2017, 31, 4625Ð4632. (10.1002/ejoc.201700700).

Vizcaino, J. A.;Walzer, M.;Jimenez, R. C.;Bittremieux, W.;Bouyssie, D.;Carapito, C.;Corrales, F.;Ferro, M.;Heck, A. J. R.;Horvatovich, P.;Hubalek, M.;Lane, L.;Laukens, K.;Levander, F.;Lisacek, F.;Novak, P.;Palmblad, M.;Piovesan, D.;Puhler, A.;Schwammle, V.;Valkenborg, D.;van Rijswijk, M.;Vondrasek, J.;Eisenacher, M.;Martens, L.;Kohlbacher, O.
A community proposal to integrate proteomics activities in ELIXIR
F1000Res, 2017, 6, 875. (10.12688/f1000research.11751.1).

Cura, V.; Marechal, N.; Troffer-Charlier, N.; Strub, J. M.; van Haren, M. J.; Martin, N. I.; Cianférani, S.; Bonnefond, L.; Cavarelli, J.
Structural studies of protein arginine methyltransferase 2 reveal its interactions with potential substrates and inhibitors
Febs Journal, 2017, 284(1), 77-96. (10.1111/febs.13953).

Mohideen-Abdul, K.;Tazibt, K.;Bourguet, M.;Hazemann, I.;Lebars, I.;Takacs, M.;Cianférani, S.;Klaholz, B. P.;Moras, D.;Billas, I. M. L.
Importance of the Sequence-Directed DNA Shape for Specific Binding Site Recognition by the Estrogen-Related Receptor
Frontiers in Endocrinology, 2017, 8, 140. (10.3389/fendo.2017.00140).

Montacie, C.; Durut, N.; Opsomer, A.; Palm, D.; Comella, P.; Picart, C.; Carpentier, M. C.; Pontvianne, F.; Carapito, Christine; Schleiff, E.; Saez-Vasquez, J.
Nucleolar Proteome Analysis and Proteasomal Activity Assays Reveal a Link between Nucleolus and 26S Proteasome in A. thaliana
Frontiers in Plant Science, 2017, 8, 1815. (10.3389/fpls.2017.01815).

Bisse, E.; Schaeffer-Reiss, C.; Van Dorsselaer, A.; Alayi, T. D.; Epting, T.; Winkler, K.; Cardenas, A. S. B.; Soman, J.; Birukou, I.; Samuel, P. P.; Olson, J. S.
Hemoglobin Kirklareli (alpha H58L), a New Variant Associated with Iron Deficiency and Increased CO Binding
Journal of Biological Chemistry, 2017, 292(6), 2542-2555. (10.1074/jbc.M116.764274).

Wagner-Rousset, E.;Fekete, S.;Morel-Chevillet, L.;Colas, O.;Corvaïa, N.;Cianférani, S.;Guillarme, D.;Beck, A.
Development of a fast workflow to screen the charge variants of therapeutic antibodies.
Journal of Chromatography A, 2017, 1498, 147-154. (10.1016/j.chroma.2017.02.065).

Lemaitre-Guillier, C.; Hovasse, A.; Schaeffer-Reiss, C.; Recorbet, G.; Poinssot, B.; Trouvelot, S.; Daire, X.; Adrian, M.; Heloir, M. C.
Proteomics towards the understanding of elicitor induced resistance of grapevine against downy mildew
Journal of Proteomics, 2017, 156, 113-125. (10.1016/j.jprot.2017.01.016).

Dalzon, B.; Aude-Garcia, C.; Collin-Faure, V.; Diemer, H.; Beal, D.; Dussert, F.; Fenel, D.; Schoehn, G.; Cianférani, S.; Carriere, M.; Rabilloud, T.
Differential proteomics highlights macrophage-specific responses to amorphous silica nanoparticles
Nanoscale, 2017, 9(27), 9641-9658. (10.1039/c7nr02140b).

Bourgeois, G.;Marcoux, J.;Saliou, J. M.;Cianferani, S.;Graille, M.
Activation mode of the eukaryotic m2G10 tRNA methyltransferase Trm11 by its partner protein Trm112
Nucleic Acids Research, 2017, 45, 1971-1982. (10.1093/nar/gkw1271).

Guéguéniat, J.;Dupin, A.;Stojko, J.;Beaurepaire, L.;Cianférani, S.;Mackereth, C.;Minvielle-Sébastia, L.;Fribourg, S.
Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3′-end processing.
Nucleic Acids Research, 2017, 45, 10115-10131. (10.1093/nar/gkx674).

Radu, L.;Schoenwetter, E.;Braun, C.;Marcoux, J.;Koelmel, W.;Schmitt, D.;Kuper, J.;Cianférani, S.;Egly, J.;Poterszman, A.;Kisker, C.
The intricate network between the p34 and p44 subunits is central to the activity of the transcription/DNA repair factor TFIIH.
Nucleic Acids Research, 2017, 45, 10872-10883. (10.1093/nar/gkx743).

Charbonnel, C.;Niazi, A. K.;Elvira-Matelot, E.;Nowak, E.;Zytnicki, M.;de Bures, A.;Jobet, E.;Opsomer, A.;Shamandi, N.;Nowotny, M.;Carapito, C.;Reichheld, J. P.;Vaucheret, H.;Saez-Vasquez, J.
The siRNA suppressor RTL1 is redox-regulated through glutathionylation of a conserved cysteine in the double-stranded-RNA-binding domain
Nucleic Acids Research, 2017, 45, 11891-11907. (10.1093/nar/gkx820).

Licona, C.; Spaety, M. E.; Capuozzo, A.; Ali, M.; Santamaria, R.; Armant, O.; Delalande, F.; Van Dorsselaer, Alain; Cianférani, Sarah; Spencer, J.; Pfeffer, M.; Mellitzer, G.; Gaiddon, C.
A ruthenium anticancer compound interacts with histones and impacts differently on epigenetic and death pathways compared to cisplatin
Oncotarget, 2017, 8(2), 2568-2584. (10.18632/oncotarget.13711).

Ehrmann, F.;Stojko, J.;Metz, A.;Debaene, F.;Barandun, L.;Heine, A.;Diederich, F.;Cianférani, S.;Reuter, K.;Klebe, G.
“Soaking suggests “”alternative facts””: Only co-crystallization discloses major ligand-induced interface rearrangements of a homodimeric tRNA-binding protein indicating a novel mode-of-inhibition.”
PLOS One, 2017, 12, e0175723. . (10.1371/journal.pone.0175723).

Bouguenina, H.;Salaun, D.;Mangon, A.;Muller, L.;Baudelet, E.;Camoin, L.;Tachibana, T.;Cianférani, S.;Audebert, S.;Verdier-Pinard, P.;Badache, A.
EB1-binding-myomegalin protein complex promotes centrosomal microtubules functions.
Proc Natl Acad Sci U S A., 2017, 114, E10687-E10696.. (10.1073/pnas.1705682114).

Grillon, A.; Westermann, B.; Cantero, P.; Jaulhac, B.; Voordouw, M. J.; Kapps, D.; Collin, E.; Barthel, C.; Ehret-Sabatier, L.; Boulanger, N.
Identification of Borrelia protein candidates in mouse skin for potential diagnosis of disseminated Lyme borreliosis
Scientific Reports, 2017, 7, 16719. (10.1038/s41598-017-16749-9).

Lanshoeft, C.;Wolf, T.;Heudi, O.;Cianférani, S.;Barteau, S.;Walles, M.;Picard, F.;Kretz, O.
The use of generic surrogate peptides for the quantitative analysis of human immunoglobulin G1 in pre-clinical species with high-resolution mass spectrometry.
Analytical and Bioanalytical Chemistry, 2016, 408, 1687-1699. (10.1007/s00216-015-9286-x).

Lanshoeft, C.;Heudi, O.;Cianférani, S.
SMART Digestª compared with pellet digestion for analysis of human immunoglobulin G1 in rat serum by liquid chromatography tandem mass spectrometry.
Analytical Biochemistry, 2016, 501, 23-25.. (10.1016/j.ab.2016.02.006).

Lanshoeft, C.;Heudi, O.;Cianférani, S.;Warren, A.;Picard, F.;Kretz, O.
Quantitative analysis of hIgG1 in monkey serum by LC-MS/MS using mass spectrometric immunoassay.
Bioanalysis., 2016, 8, 1035-1049. (10.4155/bio.16.32).

Beck, A.; Terral, G.; Debaene, F.; Wagner-Rousset, E.; Marcoux, J.; Janin-Bussat, M. C.; Colas, O.; Van Dorsselaer, A.; Cianférani, S.
Cutting-edge mass spectrometry methods for the multi-level structural characterization of antibody-drug conjugates
Expert Review of Proteomics, 2016, 13(2), 157-183. (10.1586/14789450.2016.1132167).

Hovasse, A.; Alayi, T. D.; Van Dorsselaer, Alain; Marchal, R.; Jegou, S.; Schaeffer-Reiss, Christine
In-depth glycoproteomic characterisation of grape berry vacuolar invertase using a combination of mass spectrometry-based approaches
Food Chemistry, 2016, 200, 237-244. (10.1016/j.foodchem.2016.01.024).

Hovasse, A.;Bruneel, O.;Casiot, C.;Desoeuvre, A.;Farasin, J.;Hery, M.;Van Dorssaeler, A.;Carapito, C.;Arsene-Ploetze, F.
Spatio-temporal detection of the Thiomonas population and the Thiomonas arsenite oxidase involved in natural arsenite attenuation processes in the Carnoulès Acid Mine Drainage
Frontiers in Cell and Developmental Biology, 2016, 4, 3. (10.3389/fcell.2016.00003).

Souri, Nabila; Tian, Pingping; Lecointre, Alexandre; Lemaire, Zoë; Chafaa, Salah; Strub, J. M.; Cianférani, Sarah; Elhabiri, Mourad; Platas-Iglesias, Carlos; Charbonnière, Loïc J.
Step by Step Assembly of Polynuclear Lanthanide Complexes with a Phosphonated Bipyridine Ligand
Inorganic Chemistry, 2016, 55(24), 12962-12974. (10.1021/acs.inorgchem.6b02414).

Terral, G.;Beck, A.;Cianférani, S.
Insights from native mass spectrometry and ion mobility-mass spectrometry for antibody and antibody-based product characterization.
Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 2016, 1032, 79-90.. (10.1016/j.jchromb.2016.03.044).

Lanshoeft, C.;Wolf, T.;Walles, M.;Barteau, S.;Picard, F.;Kretz, O.;Cianférani, S.;Heudi, O.
The flexibility of a generic LC-MS/MS method for the quantitative analysis of therapeutic proteins based on human immunoglobulin G and related constructs in animal studies.
Journal of Pharmaceutical and Biomedical Analysis, 2016, 131, 214-222. (10.1016/j.jpba.2016.08.039).

Muller, L.; Fornecker, L.; Van Dorsselaer, Alain; Cianférani, Sarah; Carapito, Christine
Benchmarking sample preparation/digestion protocols reveals tube-gel being a fast and repeatable method for quantitative proteomics
Proteomics, 2016, 16(23), 2953-2961. (10.1002/pmic.201600288).

Bertile, Fabrice; Fouillen, Laetitia; Wasselin, Thierry; Maes, Pauline; Le Maho, Yvon; Van Dorsselaer, Alain; Raclot, Thierry
The safety limits of an extended fast: lessons from a non-model organism
Scientific Reports, 2016, 6, 39008. (10.1038/srep39008).

Lederer, M.; Hahn, U.; Strub, J. M.; Cianférani, S.; Van Dorsselaer, A.; Nierengarten, J. F.; Torres, T.; Guldi, D. M.
Probing Supramolecular Interactions between a Crown Ether Appended Zinc Phthalocyanine and an Ammonium Group Appended to a C-60 Derivative
Chemistry-A European Journal, 2016, 22(6), 2051-2059. (10.1002/chem.201503315).

Al-Shuaeeb, R. A. A.; Kolodych, S.; Koniev, O.; Delacroix, S.; Erb, S.; Nicolay, S.; Cintrat, J. C.; Brion, J. D.; Cianférani, S.; Alami, M.; Wagner, A.; Messaoudi, S.
Palladium-Catalyzed Chemoselective and Biocompatible Functionalization of Cysteine-Containing Molecules at Room Temperature
Chemistry-A European Journal, 2016, 22(32), 11365-11370. (10.1002/chem.201602277).

Sigwalt, D.; Caballero, R.; Holler, M.; Strub, J. M.; Van Dorsselaer, A.; Nierengarten, J. F.
Ultra-Fast Dendritic Growth Based on the Grafting of Fullerene Hexa-Adduct Macromonomers onto a Fullerene Core
European Journal of Organic Chemistry, 2016, (16), 2882-2887. (10.1002/ejoc.201600439).

El Asmar, Z.;Terrand, J.;Jenty, M.;Host, L.;Mlih, M.;Zerr, A.;Justiniano, H.;Matz, R. L.;Boudier, C.;Scholler, E.;Garnier, J. M.;Bertaccini, D.;Thierse, D.;Schaeffer, C.;Van Dorsselaer, A.;Herz, J.;Bruban, V.;Boucher, P.
Convergent Signaling Pathways Controlled by LRP1 (Receptor-related Protein 1) Cytoplasmic and Extracellular Domains Limit Cellular Cholesterol Accumulation.
Journal of Biological Chemistry, 2016, 291, 5116-5127.. (10.1074/jbc.M116.714485).

Ma, S.;Vigneron, S.;Robert, P.;Strub, J. M.;Cianferani, S.;Castro, A.;Lorca, T.
Greatwall dephosphorylation and inactivation upon mitotic exit is triggered by PP1.
Journal of Cell Science, 2016, 129, 1329-1339.. (10.1242/jcs.178855).

Bragantini, B.;Tiotiu, D.;Rothé, B.;Saliou, J.;Marty, H.;Cianférani, S.;Charpentier, B.;Quinternet, M.;Manival, X.
Functional and Structural Insights of the Zinc-Finger HIT protein family members Involved in Box C/D snoRNP Biogenesis.
Journal of Molecular Biology, 2016, 428, 2488-2506. (10.1016/j.jmb.2016.04.028).

Soty, M.; Chilloux, J.; Delalande, F.; Zitoun, C.; Bertile, Fabrice; Mithieux, G.; Gautier-Stein, A.
Post-Translational Regulation of the Glucose-6-Phosphatase Complex by Cyclic Adenosine Monophosphate Is a Crucial Determinant of Endogenous Glucose Production and Is Controlled by the Glucose-6-Phosphate Transporter
Journal of Proteome Research, 2016, 15(4), 1342-1349. (10.1021/acs.jproteome.6b00110).

Vandenbrouck, Y.; Lane, L.; Carapito, C.; Duek, P.; Rondel, K.; Bruley, C.; Macron, C.; de Peredo, A. G.; Coute, Y.; ChaO, K.; Com, E.; Gateau, A.; Hesse, A. M.; Marcellin, M.; Mear, L.; Mouton-Barbosa, E.; Robin, T.; Burlet-Schiltz, O.; Cianférani, S.; Ferro, M.; Freour, T.; Lindskog, C.; Garin, J.; Pineau, C.
Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update
Journal of Proteome Research, 2016, 15(11), 3998-4019. (10.1021/acs.jproteome.6b00400).

Luche, Sylvie; Eymard-Vernain, Elise; Diemer, Hélène; Van Dorsselaer, Alain; Rabilloud, Thierry; Lelong, Cécile
Zinc oxide induces the stringent response and major reorientations in the central metabolism of Bacillus subtilis
Journal of Proteomics, 2016, 135, 170-180. (10.1016/j.jprot.2015.07.018).

Armand, L.; Biola-Clier, M.; Bobyk, L.; Collin-Faure, V.; Diemer, H.; Strub, J. M.; Cianférani, S.; Van Dorsselaer, A.; Herlin-Boime, N.; Rabilloud, T.; Carriere, M.
Molecular responses of alveolar epithelial A549 cells to chronic exposure to titanium dioxide nanoparticles: A proteomic view
Journal of Proteomics, 2016, 134, 163-173. (10.1016/j.jprot.2015.08.006).

Ramus, C.; Hovasse, A.; Marcellin, M.; Hesse, A. M.; Mouton-Barbosa, E.; Bouyssie, D.; Vaca, S.; Carapito, C.; ChaO, K.; Bruley, C.; Garin, J.; Cianférani, S.; Ferro, M.; Van Dorssaeler, A.; Burlet-Schiltz, O.; Schaeffer, C.; Coute, Y.; de Peredo, A. G.
Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset
Journal of Proteomics, 2016, 132, 51-62. (10.1016/j.jprot.2015.11.011).

Aude-Garcia, C.; Dalzon, B.; Ravanat, J. L.; Collin-Faure, V.; Diemer, H.; Strub, J. M.; Cianférani, S.; Van Dorsselaer, A.; Carriere, M.; Rabilloud, T.
A combined proteomic and targeted analysis unravels new toxic mechanisms for zinc oxide nanoparticles in macrophages
Journal of Proteomics, 2016, 134, 174-185. (10.1016/j.jprot.2015.12.013).

Plumel, Marine I.; Benhaim-Delarbre, Margaux; Rompais, Magali; Thiersé, Danièle; Sorci, Gabriele; van Dorsselaer, Alain; Criscuolo, François; Bertile, Fabrice
Differential proteomics reveals age-dependent liver oxidative costs of innate immune activation in mice
Journal of Proteomics, 2016, 135, 181-190. (10.1016/j.jprot.2015.09.008).

Sangare, L. O.; Alayi, T. D.; Westermann, B.; Hovasse, A.; Sindikubwabo, F.; Callebaut, I.; Werkmeister, E.; Lafont, F.; Slomianny, C.; Hakimi, M. A.; Van Dorsselaer, Alain; Schaeffer-Reiss, Christine; Tomavo, S.
Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection
Nature Communications, 2016, 7, 11191. (10.1038/ncomms11191).

Frottin, F.; Bienvenut, W. V.; Bignon, J.; Jacquet, E.; Jacome, A. S. V.; Van Dorsselaer, Alain; Cianférani, Sarah; Carapito, Christine; Meinnel, T.; Giglione, C.
MetAP1 and MetAP2 drive cell selectivity for a potent anti-cancer agent in synergy, by controlling glutathione redox state
Oncotarget, 2016, 7(39), 63306-63323. (10.18632/oncotarget.11216).

Rejón, J. D.;Delalande, F.;Schaeffer-Reiss, C.;de Dios Alché, J.;Rodríguez-García, M. I.;Van Dorsselaer, A.;Castro, A. J.
The Pollen Coat Proteome: At the Cutting Edge of Plant Reproduction
Proteomes , 2016, 4, 5:1-23. (10.3390/proteomes4010005).

Dalzon, Bastien; Diemer, Hélène; Collin-Faure, Véronique; Cianférani, Sarah; Rabilloud, Thierry; Aude-Garcia, Catherine
Culture medium associated changes in the core proteome of macrophages and in their responses to copper oxide nanoparticles
Proteomics, 2016, 16(22), 2864-2877. (10.1002/pmic.201600052).

Thébault, S.;Agez, M.;Chi, X.;Stojko, J.;Cura, V.;Telerman, S. B.;Maillet, L.;Gautier, F.;Billas-Massobrio, I.;Birck, C.;Troffer-Charlier, N.;Karafin, T.;Honoré, J.;Senff-Ribeiro, A.;Montessuit, S.;Johnson, C. M.;Juin, P.;Cianférani, S.;Martinou, J. C.;Andrews, D. W.;Amson, R.;Telerman, A.;Cavarelli, J.
TCTP contains a BH3-like domain, which instead of inhibiting, activates Bcl-xL
Scientific Reports, 2016, 6, 19725. (10.1038/srep19725).

Rhiel, M.; Bittl, V.; Tribensky, A.; Charnaud, S. C.; Strecker, M.; Muller, S.; Lanzer, M.; Sanchez, C.; Schaeffer-Reiss, C.; Westermann, B.; Crabb, B. S.; Gilson, P. R.; Kulzer, S.; Przyborski, J. M.
Trafficking of the exported P. falciparum chaperone PfHsp70x
Scientific Reports, 2016, 6, 13. (10.1038/srep36174).